We can use methods of genetic analysis to connect phylogenic information to geographical histories. Human migration has left genetic traces on every continent, and allows us to trace our roots back to Africa. Molecular genetic methods allow us to determine whether or not trait states were ancestral, which can have profound implications for fundamental biological ideas.
The Tree of Life must be discovered through rigorous analysis. Genetic information is crucial because appearances can be deceiving, and species that look similar can prove to be genetically very dissimilar and not share recent common ancestors. Two criteria, used to determine what the “correct” Tree is, are simplicity and whether the tree maximizes the probability of observing what we actually see.
Speciation is the process through which species diverge from each other and/or from a common ancestor. There are several definitions of species, most of which focus on reproductive isolation and/or phylogenetic similarities. This can cause some controversy. Speciation can result from geographical separation or ecological specialization. There are stages of speciation in which organisms cluster first into distinct populations before finally becoming different species.
Sexual selection is a component of natural selection in which mating success is traded for survival. Natural selection is not necessarily survival of the fittest, but reproduction of the fittest. Sexual dimorphism is a product of sexual selection. In intersexual selection, a sex chooses a mate. In intrasexual selection, individuals of one sex compete among themselves for access to mates. Often honest, costly signals are used to help the sex that chooses make decisions.
Sex allocation is an organism’s decision on how much of its reproductive investment should be distributed to male and female functions and/or offspring. Under most conditions, the optimal ratio is 50:50, but that can change under certain circumstances. Sex allocation determines what sexes sequential hermaphrodites should be at each part of their life as well as how simultaneous hermaphrodites should behave. Some species have more control over the sexes of their offspring than others, and adjust the sex ratios of their offspring depending on the environment and conditions.
Life history covers three main classes of traits in organisms: age and size at maturity, number and size of offspring, and lifespan and reproductive investment. Organisms must make tradeoffs among these traits that typically cause them to come to evolutionary equilibrium at intermediate values.
Genomic conflict arises when the interests of various genomic elements, such as chromosomes and cytoplasmic organelles, are not aligned. These conflicts arise in two situations: either when one unit is contained within another, as a mitochondrion is contained within a cell, or when inheritance is asymmetrical. Genomic conflict can thus occur within a cell, within an organism, or between two organisms, such as a mother and developing fetus.
There are several explanations for the evolution of sex and its continued prevalence. One is facilitating the spread of helpful mutations while hastening the removal of harmful ones. Another is expediting resistance against pathogens. Sex does have several costs compared to asex, such as only giving half your genome to offspring, having to find mates, and the risk of predation and STDs. Overall, the benefits outweigh the costs and sex has a firm hold on the majority of the recent branches of the tree of life.
Reaction norms depict the range of phenotypes a single genotype can produce, depending on the environment. Reaction norms must fit within an organism’s phylogenetic constraints. They can differ for different individuals within a population, but some traits differ very little based on the environment; some do not differ at all.
Development is responsible for the complexity of multicellular organisms. It helps to map the genotype into the phenotype expressed by the organism. Development is responsible for ancient patterns among related organisms, and many structures important to development shared by many life forms have changed little over hundreds of millions of years. Development is expressed combinatorially, allowing a relatively small amount of genetic information to be expressed in many different ways.
